curated by UC Davis College of Biological Sciences
Biology 501 is a graduate level course taught at the University of British Columbia on quantitative methods for data analysis in ecology and evolution. Composed of lectures and discussions, this content covers methodological topics and practical workshops using the R package.
Learn R… in R! Swirl is an R package that takes an interactive approach to learning R. After installing swirl via RStudio (or just R works too!) and loading the package into your library, you are all set to begin!
This course will provide a practical introduction to common tools used in data-intensive research, including the UNIX shell, version control with git, RMarkdown, JupyterLab, and workflows with snakemake.
These R video tutorials are organized into 5 different series with the overall goal of using R to implement standard sets of analytic procedures learned in introductory and intermediate applied statistics course.
A guided analysis tutorial using the Seurat clustering workflow– featuring new computational methods for single-cell datasets. Implements QC and data filtration, calculation of high-variance genes, dimensional reduction, graph-based clustering and the identification of cluster markers.
Extensive repository of bioinformatics courses that concentrate on many applicable topics including RNA-Seq, genome assembly, and microbial community analysis.
adegenet is an R package dedicated to the exploratory analysis of genetic data. It implements a set of tools ranging from multivariate methods to spatial genetics and genome-wise SNP data analysis.
An introductory course to R and RStudio that focuses on teaching vital coding functions to students with the goal of understanding bioinformatics principles and being able to plot coverage along a chromosome.
Packages are the fundamental units of reproducible R code. They include reusable R functions, the documentation that describes how to use them, and sample data. This book will guide the reader through turning code into packages that others can easily download and use.
Pricing: Available for purchase on Amazon
Introduction to WinBUGS for Ecologists introduces applied Bayesian modeling to ecologists using the highly acclaimed, free WinBUGS software. It offers an understanding of statistical models as abstract representations of the various processes that give rise to a data set.
Pricing: Individual chapters available for purchase here
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